Gautam S, Pandey J, Scheuring DC, Koym JW, Vales MI. Genetic Basis of Potato Tuber Defects and Identification of Heat-Tolerant Clones. Plants 2024; 13(5):616.



Pandey, J., S. Gautam, D.C. Scheuring, J.W. Koym, and M.I. Vales. 2023. Variation and genetic basis of mineral content in potato tubers and prospects for genomic selection. Frontiers in Plant Science. 

Pandey, P., D.C. Scheuring, J.W. Koym, J.B. Endelman, and M.I. Vales. 2023. Genomic selection and genome-wide association studies in tetraploid chipping potatoes. The Plant Genome. 

Cristiane Hayumi Taniguti, Lucas Mitsuo Taniguti, Rodrigo Rampazo Amadeu, Jeekin Lau, Gabriel de Siqueira Gesteira, Thiago de Paula Oliveira, Getulio Caixeta Ferreira, Guilherme da Silva Pereira, David Byrne, Marcelo Mollinari, Oscar Riera-Lizarazu, Antonio Augusto Franco Garcia. "Developing best practices for genotyping-by-sequencing analysis in the construction of linkage maps." GigaScience, Volume 12, 2023, giad092,

Zhao, D., Mejia-Guerra, K. M., Mollinari, M., Samac, D., Irish, B., Heller-Uszynska, K., Beil, C. T. and Sheehan, M. J. (2023) “A public mid-density genotyping platform for alfalfa (Medicago sativa L.)”, Genetic Resources, 4(8), pp. 55–63.

Pandey, J., Thompson, D., Joshi, M., Scheuring, D.C., Koym, J., Joshi, V., and Vales, M.I. Genetic architecture of tuber-bound free amino acids in potato and effect of growing environment on the amino acid content. Sci Rep 13, 13940 (2023).

Rawandoozi, Z., Young, E. L., Liang, S., Wu, X., Fu, Q., Hochhaus, T., Yan, M., Rawandoozi, M. Y., Klein, P. E., Byrne, D. H., & Riera-Lizarazu, O. (2023). Pedigree-based QTL analysis of flower size traits in two multi-parental diploid rose populations. Frontiers in Plant Science, 14, 1226713.

Lau, J., Gill, H., Taniguti, C. H., Young, E. L., Klein, P. E., Byrne, D. H., & Riera-Lizarazu, O. (2023). QTL discovery for resistance to black spot and cercospora leaf spot, and defoliation in two interconnected F1 bi-parental tetraploid garden rose populations. Frontiers in Plant Science, 14, 1209445.

Chizk, T. M., Clark, J. R., Johns, C., Nelson, L., Ashrafi, H., Aryal, R., & Worthington, M. L. (2023). Genome-wide association identifies key loci controlling blackberry postharvest quality. Frontiers in Plant Science, 14, 1182790.

Olmedo-Velarde, A., Ochoa-Corona, F. M., Larrea-Sarmiento, A. E., Elbeaino, T., & Flores, F. (2023). In-silico prediction of RT-qPCR-high resolution melting for broad detection of emaraviruses. PLOS ONE, 18(5), e0272980.

Angelin-Bonnet, O., Thomson, S., Vignes, M. et al. Investigating the genetic components of tuber bruising in a breeding population of tetraploid potatoes. BMC Plant Biol 23, 238 (2023).

Hochhaus, T., Lau, J., Taniguti, C. H., Young, E. L., Byrne, D. H., & Riera-Lizarazu, O. (2023). Meta-Analysis of Rose Rosette Disease-Resistant Quantitative Trait Loci and a Search for Candidate Genes. Pathogens, 12(4), 575.

Labroo, M.R., Endelman, J.B., Gemenet, D.C. et al. Clonal diploid and autopolyploid breeding strategies to harness heterosis: insights from stochastic simulation. Theor Appl Genet 136, 147 (2023).

Andrea L. Myers, Renee Terrell Threlfall, Luke R. Howard, Cindi R. Brownmiller, John R. Clark, Margaret L. Worthington, and Scott Lafontaine. "Identifying Unique Quality Attributes of Arkansas-Grown Fresh-Market Blackberries." ACS Food Science & Technology 3 (5), 816-830. 06 May 2023.

Harmon DD, Chen H, Byrne D, Liu W, Ranney TG. 2023. “Cytogenetics, ploidy, and genome sizes of rose (Rosaspp.) cultivars and breeding lines.” Ornamental Plant Research 3:10.

Yencho, Craig. Sweetpotato Plant Named ‘NCORNSP-030ILPL.’ 11 Apr. 2023.

Christopher W. Benson, Matthew R. Sheltra, Jeff P. Maughan et al. Homoeologous evolution of the allotetraploid genome of Poa annua L., 03 April 2023, PREPRINT,


Endelman, Jeffrey. “Fully Efficient, Two-Stage Analysis of Multi-Environment Trials with Directional Dominance and Multi-Trait Genomic Selection.” 2022 PREPRINT,

Zena J Rawandoozi, Ellen L Young, Muqing Yan, Seza Noyan, Qiuyi Fu, Tessa Hochhaus, Maad Y Rawandoozi, Patricia E Klein, David H Byrne, Oscar Riera-Lizarazu. QTL mapping and characterization of black spot disease resistance using two multi-parental diploid rose populations. Horticulture Research, Volume 9, 2022, uhac183,

Guilherme da Silva Pereira, Marcelo Mollinari, Zhao-Bang Zeng. "Multiple QTL Mapping in an Autotetraploid F1 population with QTLpoly." 2022,

Pandey, Jeewan, D.C. Scheuring, J.W. Koym, and M.I. Vales. “Genomic Regions Associated with Tuber Traits in Tetraploid Potatoes and Identification of Superior Clones for Breeding Purposes.” Frontiers in Plant Science, vol. 13, 2022,

Lau, Jeekin, et al. “Rose Rosette Disease Resistance Loci Detected in Two Interconnected Tetraploid Garden Rose Populations.” Frontiers in Plant Science, vol. 13, 2022,

Young, Ellen, et al. "Identification of QTLs for Reduced Susceptibility to Rose Rosette Disease in Diploid Roses." Pathogens, vol. 11, no. 6, p. 660, 2022,

Taniguti et al.VIEWpoly: a visualization tool to integrate and explore results of polyploid genetic analysis. Journal of Open Source Software, 7(74), 4242, 2022.

Hoopes, Genevieve, et al. "Phased, Chromosome-Scale Genome Assemblies of Tetraploid Potato Reveal a Complex Genome, Transcriptome, and Predicted Proteome Landscape Underpinning Genetic Diversity." Molecular Plant, vol. 15, no. 3, 2022, pp. 520-536,

Thérèse Navarro, A., Tumino, G., Voorrips, R.E. et al. Multiallelic models for QTL mapping in diverse polyploid populations. BMC Bioinformatics 23, 67 (2022).

Petrella, D.P., Breuillin-Sessoms, F. & Watkins, E. Layering contrasting photoselective filters improves the simulation of foliar shade. Plant Methods 18, 16 (2022).


Peter M Bourke, Roeland E Voorrips, Christine A Hackett, Geert van Geest, Johan H Willemsen, Paul Arens, Marinus J M Smulders, Richard G F Visser, Chris Maliepaard, Detecting quantitative trait loci and exploring chromosomal pairing in autopolyploids using polyqtlR, Bioinformatics, Volume 37, Issue 21, 1 November 2021, Pages 3822–3829,

Macnee, N., Hilario, E., Tahir, J. et al. Peridermal fruit skin formation in Actinidia sp. (kiwifruit) is associated with genetic loci controlling russeting and cuticle formation. BMC Plant Biol 21, 334 (2021).

Stefaniak, Thomas, et al. "Genotype and Variable Nitrogen Effects on Tuber Yield and Quality for Red Fresh Market Potatoes in Minnesota." Agronomy, vol. 11, no. 2, 2021, p. 255,


Jones, Colin, et al. "Nitrogen Uptake and Utilization in Advanced Fresh-Market Red Potato Breeding Lines." Crop Science, vol. 61, no. 2, 2021, pp. 878-895,

Jason D Zurn, Mandie Driskill, Sook Jung, Dorrie Main, Melinda H Yin, Melissa C Clark, Lailiang Cheng, Hamid Ashrafi, Rishi Aryal, John R Clark, Margaret Worthington, Chad E Finn, Cameron Peace, Amy Iezzoni, Nahla Bassil, A Rosaceae Family-Level Approach To Identify Loci Influencing Soluble Solids Content in Blackberry for DNA-Informed Breeding, G3 Genes|Genomes|Genetics, Volume 10, Issue 10, 1 October 2020, Pages 3729–3740,

Marcelo Mollinari, Bode A Olukolu, Guilherme da S Pereira, Awais Khan, Dorcus Gemenet, G Craig Yencho, Zhao-Bang Zeng, Unraveling the Hexaploid Sweetpotato Inheritance Using Ultra-Dense Multilocus Mapping, G3 Genes|Genomes|Genetics, Volume 10, Issue 1, 1 January 2020, Pages 281–292,


Foster, Toshi, et al. "Genetic and Genomic Resources for Rubus Breeding: a Roadmap for the Future." Horticulture Research, vol. 6, no. 1, 2019, pp. 1-9, 


Byrne, David H., Patricia Klein, Muqing Yan, Ellen Young, Jeekin Lau, Kevin Ong, Madalyn Shires, Jennifer Olson, Mark Windham, Tom Evans, and Danielle Novick. "Challenges of Breeding Rose Rosette–resistant Roses". HortScience 53.5 (2018): 604-608.

Yan, Muqing, et al. "Genotyping-by-Sequencing Application on Diploid Rose and a Resulting High-Density SNP-Based Consensus Map." Horticulture Research, vol. 5, no. 1, 2018, pp. 1-14,