Input Tests

diaQTL

• tetra_diaQTL_BayesCI_list.RData
• tetra_diaQTL_fitQTL_list.RData
• tetra_diaQTL_scan1_list.RData
• tetra_diaQTL_scan1_summaries_list.RData

Genome Browser

• NSP306_trifida_chr_v3.fa.gz
• NSP306_trifida_chr_v3.fa.gz.fai
• NSP306_trifida_chr_v3.fa.gz.gzi
• NSP306_trifida_v3.hc.gene_models.gff3.gz
• NSP306_trifida_v3.hc.gene_models.gff3.gz.tbi
• Stuberosum_448_v4.03.fa.gz
• Stuberosum_448_v4.03.fa.gz.fai
• Stuberosum_448_v4.03.fa.gz.gzi
• Stuberosum_448_v4.03.gene_exons.gff3.gz
• Stuberosum_448_v4.03.gene_exons.gff3.gz.tbi

MAPpoly

• hexa_MAPpoly_maps.RData
• tetra_MAPpoly_maps.RData

polyqtlR

• hexa_polyqtlR_IBD.RData
• hexa_polyqtlR_phenotypes.RData
• hexa_polyqtlR_QTLscan_list.RData
• tetra_polyqtlR_effects.RData
• tetra_polyqtlR_IBD.RData
• tetra_polyqtlR_phenotypes.RData
• tetra_polyqtlR_qtl_info.RData
• tetra_polyqtl_QTLscan.RData

QTLpoly

• hexa_QTLpoly_data.RData
• hexa_QTLpoly_effects.RData
• hexa_QTLpoly_feim.RData
• hexa_QTLpoly_fitted.RData
• hexa_QTLpoly_remim.RData
• tetra_QTLpoly_data.RData
• tetra_QTLpoly_effects.RData
• tetra_QTLpoly_feim.RData
• tetra_QTLpoly_fitted.RData
• tetra_QTLpoly_remim.RData

polymapR

• tetra_polymapR_dataset.RData
• tetra_polymapR_map.RData

Tutorials